Function reference • whitetailedSIRS

All functions

alternative(): Define parameters for solving white-tailed deer SIRS ODE equations under different management alternatives

alternatives_across_systems: alternatives_across_systems

calc_contact_rate(): Contact rate calculation for wild deer

calc_sigma_aero(): Calculate probability of infection via aerosol \(\sigma^{AERO}\)

calc_sigma_dc(): Calculate probability of infection given physical contact \(\sigma^{DC}\)

contact_rate_params: Contact rate parameters

cross_sector_results: cross_sector_results

draw_elicitation_samples(): Random draw of parameters from expert elicitation

elicitation_data: elicitation_data

get_EE_param_vals(): get_EE_param_vals: Prepare random draws for inputs in the SIRS ODE equations.

initial_compartments(): Define starting compartment sizes for SIRS ODE Solver

initial_infection_results_1_in_1000: initial_infection_results_1_in_1000

initial_infection_results_1_in_1bil: initial_infection_results_1_in_1bil

initial_infection_results_1_in_1mil: initial_infection_results_1_in_1mil

run(): Run ODE Solver for SIRS model

scenario_projections: scenario_projections

scenario_results: scenario_results

simple_sirs(): Simple function to generate SIRS model projections

simple_sirs_with_cumulative(): Simple function to generate SIRS model projections

whitetailedSIRS: whitetailedSIRS: A package to project SARS-CoV-2 outbreak dynamics in white-tailed deer